4A3Y	Hydrolase	date	Oct 06, 2011
title	Crystal Structure Of Raucaffricine Glucosidase From Ajmaline Biosynthesis Pathway
authors	L.Xia, M.Ruppert, M.Wang, S.Panjikar, L.Barleben, C.Rajendran, H.L J.Stoeckigt
compound		source
Molecule: Raucaffricine-O-Beta-D-Glucosidase Chain: A, B Synonym: Raucaffricine Glucosidase Ec: 3.2.1.125 Engineered: Yes		Organism_scientific: Rauvolfia Serpentina Organism_common: Serpentwood Organism_taxid: 4060 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: M15prep4 Expression_system_vector_type: Plasmid Expression_system_vector: Pqe-2
symmetry	Space Group: I 2 2 2	R_factor 0.165 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.774 127.329 215.837 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	GOL, SO4	enzyme	Hydrolase E.C.3.2.1.125 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structures of Alkaloid Biosynthetic Glucosidases Decode Substrate Specificity., Xia L, Ruppert M, Wang M, Panjikar S, Lin H, Rajendran C, Barleben L, Stockigt J, ACS Chem Biol. 2011 Oct 28. PMID:22004291

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (321 Kb) [Save to disk] Biological Unit Coordinates (4a3y.pdb1.gz) 1250 Kb LPC: Ligand-Protein Contacts for 4A3Y CSU: Contacts of Structural Units for 4A3Y Structure Factors (609 Kb) Retrieve 4A3Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4A3Y from S2C, [Save to disk] Re-refined 4a3y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4A3Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4A3Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4A3Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4a3y] [4a3y_B] [4a3y_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4A3Y

Community annotation for 4A3Y at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---