4A53 Rna Binding Protein date Oct 24, 2011
title Structural Basis Of The Dcp1:Dcp2 Mrna Decapping Complex Act Edc3 And Scd6
authors S.A.Fromm, V.Truffault, J.Kamenz, J.E.Braun, N.A.Hoffmann, E.Izau R.Sprangers
compound source
Molecule: Edc3
Chain: A
Fragment: Lsm, Residues 1-121
Synonym: Uncharacterized Protein C18e5.11c
Engineered: Yes
 Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structural basis of Edc3- and Scd6-mediated activation of the Dcp1:Dcp2 mRNA decapping complex., Fromm SA, Truffault V, Kamenz J, Braun JE, Hoffmann NA, Izaurralde E, Sprangers R, EMBO J. 2011 Nov 15;31(2):279-90. doi: 10.1038/emboj.2011.408. PMID:22085934
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (646 Kb) [Save to disk]
  • Biological Unit Coordinates (4a53.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 4A53
  • Original NMR restraints for 4A53 from PDB
  • Retrieve 4A53 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A53 from S2C, [Save to disk]
    • View 4A53 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4A53
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A53, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a53] [4a53_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4A53
  • Community annotation for 4A53 at PDBWiki (http://pdbwiki.org)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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