4A5K	Signaling Protein	date	Oct 25, 2011
title	Structural Analyses Of Slm1-Ph Domain Demonstrate Ligand Binding In The Non-Canonical Site
authors	K.Anand, A.C.Gavin
compound		source
Molecule: Phosphatidylinositol 4,5-Bisphosphate-Binding Pro 1; Chain: A, B, C, D Fragment: Ph Domain, Residues 469-583 Synonym: Slm1, Synthetic Lethal With Mss4 Protein 1, Torc2 Protein Slm1; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Star Expression_system_vector_type: Plasmid Expression_system_vector: Pet100-Dtopo
symmetry	Space Group: P 1 21 1	R_factor 0.1883 R_Free 0.2270
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.300 82.300 76.400 90.00 90.10 90.00
method	X-Ray Diffraction	resolution	1.76 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural Analyses of the Slm1-PH Domain Demonstrate Ligand Binding in the Non-Canonical Site., Anand K, Maeda K, Gavin AC, PLoS One. 2012;7(5):e36526. Epub 2012 May 4. PMID:22574179

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk] Biological Unit Coordinates (4a5k.pdb1.gz) 162 Kb LPC: Ligand-Protein Contacts for 4A5K CSU: Contacts of Structural Units for 4A5K Structure Factors (352 Kb) Retrieve 4A5K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4A5K from S2C, [Save to disk] Re-refined 4a5k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4A5K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4A5K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4A5K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4a5k_B] [4a5k_D] [4a5k] [4a5k_A] [4a5k_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4A5K: [PH ] by SMART

Other resources with information on 4A5K

Community annotation for 4A5K at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---