4A7C Transferase date Nov 12, 2011
title Crystal Structure Of Pim1 Kinase With Etp46546
authors M.Mazzorana, G.Montoya
compound source
Molecule: Proto-Oncogene Serinethreonine-Protein Kinase Pi
Chain: A
Fragment: Catalytic Domain, Residues 434-717
Synonym: Pim1
Ec: 2.7.1.37, 2.7.11.1
Engineered: Yes
Other_details: Phosphorylated At Ser 261
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta Plyss
symmetry Space Group: P 65
R_factor 0.169 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.355 99.355 81.119 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand ACT, E46, IMD, SEP BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHit to lead evaluation of 1,2,3-triazolo[4,5-b]pyridines as PIM kinase inhibitors., Pastor J, Oyarzabal J, Saluste G, Alvarez RM, Rivero V, Ramos F, Cendon E, Blanco-Aparicio C, Ajenjo N, Cebria A, Albarran MI, Cebrian D, Corrionero A, Fominaya J, Montoya G, Mazzorana M, Bioorg Med Chem Lett. 2012 Feb 15;22(4):1591-7. Epub 2012 Jan 5. PMID:22266039
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4a7c.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 4A7C
  • CSU: Contacts of Structural Units for 4A7C
  • Structure Factors (2839 Kb)
  • Retrieve 4A7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A7C from S2C, [Save to disk]
  • Re-refined 4a7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A7C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A7C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a7c_A] [4a7c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A7C: [S_TKc ] by SMART
  • Other resources with information on 4A7C
  • Community annotation for 4A7C at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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