4A90 Transcription date Nov 22, 2011
title Crystal Structure Of Mouse Sap18 Residues 1-143
authors A.G.Murachelli, J.Ebert, C.Basquin, H.Le Hir, E.Conti
compound source
Molecule: Histone Deacetylase Complex Subunit Sap18
Chain: A, B
Fragment: Residues 1-143
Synonym: 18 Kda Sin3-Associated Polypeptide, Sin3-Associate Polypeptide P18, Sap18, Hdac;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.420 65.140 61.610 90.00 119.40 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of the ASAP core complex reveals the existence of a Pinin-containing PSAP complex., Murachelli AG, Ebert J, Basquin C, Le Hir H, Conti E, Nat Struct Mol Biol. 2012 Mar 4;19(4):378-86. doi: 10.1038/nsmb.2242. PMID:22388736
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (4a90.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (4a90.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4A90
  • CSU: Contacts of Structural Units for 4A90
  • Structure Factors (1401 Kb)
  • Retrieve 4A90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A90 from S2C, [Save to disk]
  • Re-refined 4a90 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A90 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A90
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A90, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a90_B] [4a90] [4a90_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4A90
  • Community annotation for 4A90 at PDBWiki (http://pdbwiki.org)
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