4A9G Hydrolase date Nov 26, 2011
title Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer In With Beta-Casein
authors H.Malet, F.Canellas, J.Sawa, J.Yan, K.Thalassinos, M.Ehrmann, T.Cl H.R.Saibil
compound source
Molecule: Periplasmic Ph-Dependent Serine Endoprotease Degq
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, Y;
Synonym: Protease Do, Degq
Ec: 3.4.21.107
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K-12
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet26b
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.50 Å
ligand
enzyme Hydrolase E.C.3.4.21.107 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, Y, E, V, Q, M, C, L, A, J, O, W, P, B, H, D, R, I, G, U


Primary referenceNewly folded substrates inside the molecular cage of the HtrA chaperone DegQ., Malet H, Canellas F, Sawa J, Yan J, Thalassinos K, Ehrmann M, Clausen T, Saibil HR, Nat Struct Mol Biol. 2012 Jan 15;19(2):152-7. doi: 10.1038/nsmb.2210. PMID:22245966
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (4a9g.pdb1.gz) 205 Kb
  • CSU: Contacts of Structural Units for 4A9G
  • Retrieve 4A9G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A9G from S2C, [Save to disk]
  • View 4A9G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A9G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A9G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a9g_G] [4a9g_A] [4a9g_F] [4a9g_V] [4a9g_E] [4a9g_B] [4a9g_U] [4a9g_Q] [4a9g_D] [4a9g_O] [4a9g_I] [4a9g_C] [4a9g_R] [4a9g_W] [4a9g_S] [4a9g_J] [4a9g_L] [4a9g_N] [4a9g_P] [4a9g_T] [4a9g] [4a9g_M] [4a9g_H] [4a9g_K] [4a9g_Y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4A9G: [PDZ ] by SMART
  • Other resources with information on 4A9G
  • Community annotation for 4A9G at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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