4AAC Transferase date Dec 01, 2011
title P38alpha Map Kinase Bound To Cmpd 29
authors S.Gerhardt, D.Hargreaves
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Cytokine Suppressive Anti- Inflammatory Drug-Binding Protein, Csaid-Binding Protein, C Kinase Mxi2, Max-Interacting Protein 2, Mitogen-Activated P Kinase P38 Alpha, Map Kinase P38 Alpha, Stress-Activated Pr Kinase 2a, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7 3.3
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.511 75.073 76.899 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand AAV, CL BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe discovery of N-cyclopropyl-4-methyl-3-[6-(4-methylpiperazin-1-yl)-4-oxoquinazolin-3(4H)-yl]ben zamide (AZD6703), a clinical p38alpha MAP kinase inhibitor for the treatment of inflammatory diseases., Brown DS, Cumming JG, Bethel P, Finlayson J, Gerhardt S, Nash I, Pauptit RA, Pike KG, Reid A, Snelson W, Swallow S, Thompson C, Bioorg Med Chem Lett. 2012 Jun 15;22(12):3879-83. Epub 2012 May 2. PMID:22608965
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4aac.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4AAC
  • CSU: Contacts of Structural Units for 4AAC
  • Structure Factors (595 Kb)
  • Retrieve 4AAC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AAC from S2C, [Save to disk]
  • Re-refined 4aac structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AAC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AAC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AAC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aac_A] [4aac]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AAC: [S_TKc ] by SMART
  • Other resources with information on 4AAC
  • Community annotation for 4AAC at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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