4AAF Hydrolase Dna date Dec 01, 2011
title Crystal Structure Of The Mutant D75n I-Crei In Complex With Target (The Four Central Bases, 2nn Region, Are Composed By 5' To 3')
authors R.Molina, P.Redondo, S.Stella, M.Marenchino, M.D'Abramo, F.L.Gerv J.C.Epinat, J.Valton, S.Grizot, P.Duchateau, J.Prieto, G.Montoya
compound source
Molecule: Dna Endonuclease I-Crei
Chain: A, B
Synonym: I-Crei, 23s Rrna Intron Protein
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Chlamydomonas Reinhardtii
Organism_taxid: 3055
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Cdfduet1, Pet24d

Molecule: 24mer Dna
Chain: E, G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 2 21 21
R_factor 0.196 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.170 71.430 173.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand EDO enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceNon-specific protein-DNA interactions control I-CreI target binding and cleavage., Molina R, Redondo P, Stella S, Marenchino M, D'Abramo M, Gervasio FL, Charles Epinat J, Valton J, Grizot S, Duchateau P, Prieto J, Montoya G, Nucleic Acids Res. 2012 Apr 11. PMID:22495931
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (4aaf.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 4AAF
  • CSU: Contacts of Structural Units for 4AAF
  • Structure Factors (274 Kb)
  • Retrieve 4AAF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AAF from S2C, [Save to disk]
  • Re-refined 4aaf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AAF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AAF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AAF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4aaf_B] [4aaf_A] [4aaf_G] [4aaf_E] [4aaf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AAF
  • Community annotation for 4AAF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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