4ACU Hydrolase date Dec 19, 2011
title Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal Structur Secretase Complexed With Compound 14
authors B.Swahn, J.Holenz, J.Kihlstrom, K.Kolmodin, J.Lindstrom, N.Plobec D.Rotticci, F.Sehgelmeble, M.Sundstrom, S.Von Berg, J.Falting, B.Georgievska, S.Gustavsson, J.Neelissen, M.Ek, L.L.Olsson, S.Be
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Residues 43-453
Synonym: Aspartyl Protease 2, Asp2, Asp 2, Beta-Site Amyloi Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Memapsin-2, Membrane-Associated Aspartic Protease 2, Bace-1
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Other_details: Propeptide Numbered 484-502
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet11a
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.588 76.372 104.213 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand ACT, QN7 enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAminoimidazoles as BACE-1 inhibitors: The challenge to achieve in vivo brain efficacy., Swahn BM, Holenz J, Kihlstrom J, Kolmodin K, Lindstrom J, Plobeck N, Rotticci D, Sehgelmeble F, Sundstrom M, Berg S, Falting J, Georgievska B, Gustavsson S, Neelissen J, Ek M, Olsson LL, Berg S, Bioorg Med Chem Lett. 2012 Mar 1;22(5):1854-9. Epub 2012 Jan 28. PMID:22325942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (4acu.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4ACU
  • CSU: Contacts of Structural Units for 4ACU
  • Structure Factors (693 Kb)
  • Retrieve 4ACU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ACU from S2C, [Save to disk]
  • Re-refined 4acu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ACU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ACU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ACU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4acu_A] [4acu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ACU
  • Community annotation for 4ACU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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