4ACY Hydrolase date Dec 21, 2011
title Selenomethionine Derivative Of The Gh99 Endo-Alpha-Mannosida Bacteroides Thetaiotaomicron
authors A.J.Thompson, R.J.Williams, Z.Hakki, D.S.Alonzi, T.Wennekes, T.M. K.Songsrirote, J.E.Thomas-Oates, T.M.Wrodnigg, J.Spreitz, A.E.S T.D.Butters, S.J.Williams, G.J.Davies
compound source
Molecule: Endo-Alpha-Mannosidase
Chain: A, B
Ec: 3.2.1.130
Engineered: Yes
Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 226186
Strain: Vpi-5482
Atcc: 29148
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1
R_factor 0.175 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.721 60.002 78.666 103.45 102.59 98.59
method X-Ray Diffractionresolution 1.69 Å
ligand FMT, GOL, MSE enzyme Hydrolase E.C.3.2.1.130 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and mechanistic insight into N-glycan processing by endo-alpha-mannosidase., Thompson AJ, Williams RJ, Hakki Z, Alonzi DS, Wennekes T, Gloster TM, Songsrirote K, Thomas-Oates JE, Wrodnigg TM, Spreitz J, Stutz AE, Butters TD, Williams SJ, Davies GJ, Proc Natl Acad Sci U S A. 2012 Jan 4. PMID:22219371
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (4acy.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (4acy.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 4ACY
  • CSU: Contacts of Structural Units for 4ACY
  • Structure Factors (869 Kb)
  • Retrieve 4ACY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ACY from S2C, [Save to disk]
  • Re-refined 4acy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ACY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ACY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ACY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4acy_B] [4acy_A] [4acy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ACY
  • Community annotation for 4ACY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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