4AI6 Motor Protein date Feb 08, 2012
title Dynein Motor Domain - Adp Complex
authors H.Schmidt, E.S.Gleave, A.P.Carter
compound source
Molecule: Glutathione S-Transferase Class-Mu 26 Kda Isozyme Heavy Chain Cytoplasmic;
Chain: A, B
Fragment: Residues 1-218,1364-3038,3292-4092
Synonym: Gst 26, Sj26 Antigen, Sjgst, Dyhc
Ec: 2.5.1.18
Engineered: Yes
Organism_scientific: Schistosoma Japonicum, Saccharomyces Cerevisiae;
Organism_taxid: 6182, 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
symmetry Space Group: P 1 21 1
R_factor 0.241 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.886 119.175 193.974 90.00 90.18 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand ADP, ATP, MG, SO4 enzyme Transferase E.C.2.5.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInsights into dynein motor domain function from a 3.3-A crystal structure., Schmidt H, Gleave ES, Carter AP, Nat Struct Mol Biol. 2012 Mar 14;19(5):492-7. doi: 10.1038/nsmb.2272. PMID:22426545
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (865 Kb) [Save to disk]
  • Biological Unit Coordinates (4ai6.pdb1.gz) 855 Kb
  • LPC: Ligand-Protein Contacts for 4AI6
  • CSU: Contacts of Structural Units for 4AI6
  • Structure Factors (5840 Kb)
  • Retrieve 4AI6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AI6 from S2C, [Save to disk]
  • Re-refined 4ai6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AI6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AI6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AI6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ai6_A] [4ai6] [4ai6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AI6: [AAA ] by SMART
  • Other resources with information on 4AI6
  • Community annotation for 4AI6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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