OCA Atlas for 4AI8

4AI8

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

DZA, GOL, SO4, ZN BindingDB

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Plant growth regulator daminozide is a selective inhibitor of human KDM2/7 histone demethylases., Rose NR, Woon EC, Tumber A, Walport LJ, Chowdhury R, Li XS, King ON, Lejeune C, Ng SS, Krojer T, Chan MC, Rydzik AM, Hopkinson RJ, Che KH, Daniel M, Strain-Damerell C, Gileadi C, Kochan G, Leung IK, Dunford J, Yeoh KK, Ratcliffe PJ, Burgess-Brown N, von Delft F, Muller S, Marsden B, Brennan PE, McDonough MA, Oppermann U, Klose RJ, Schofield CJ, Kawamura A, J Med Chem. 2012 Jul 26;55(14):6639-43. Epub 2012 Jul 11. PMID:22724510

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]

Biological Unit Coordinates (4ai8.pdb1.gz) 115 Kb

LPC: Ligand-Protein Contacts for 4AI8

CSU: Contacts of Structural Units for 4AI8

Structure Factors (207 Kb)

Retrieve 4AI8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4AI8 from S2C, [Save to disk]

Re-refined 4ai8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AI8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ai8] [4ai8_A]

SWISS-PROT database:

Domain found in 4AI8: [JmjC ] by SMART

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