OCA Atlas for 4AK4

4AK4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

P6G

enzyme

Gene
Ontology

Chain	Function	Process	Component
L, J, H, F, N, D, P, B
M, A, O, E, K, I, C, G

Primary reference

Structures and binding specificity of galactose- and mannose-binding lectins from champedak: differences from jackfruit lectins., Gabrielsen M, Abdul-Rahman PS, Othman S, Hashim OH, Cogdell RJ, Acta Crystallogr F Struct Biol Commun. 2014 Jun;70(Pt 6):709-16. doi:, 10.1107/S2053230X14008966. Epub 2014 May 24. PMID:24915077

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (400 Kb) [Save to disk]

Biological Unit Coordinates (4ak4.pdb1.gz) 200 Kb

Biological Unit Coordinates (4ak4.pdb2.gz) 197 Kb

Biological Unit Coordinates (4ak4.pdb3.gz) 196 Kb

LPC: Ligand-Protein Contacts for 4AK4

CSU: Contacts of Structural Units for 4AK4

Structure Factors (7485 Kb)

Retrieve 4AK4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4AK4 from S2C, [Save to disk]

Re-refined 4ak4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AK4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ak4] [4ak4_A] [4ak4_B] [4ak4_C] [4ak4_D] [4ak4_E] [4ak4_F] [4ak4_G] [4ak4_H] [4ak4_I] [4ak4_J] [4ak4_K] [4ak4_L] [4ak4_M] [4ak4_N] [4ak4_O] [4ak4_P]

SWISS-PROT database:

Domain found in 4AK4: [Jacalin ] by SMART

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