4AL5 Hydrolase Rna date Mar 02, 2012
title Crystal Structure Of The Csy4-Crrna Product Complex
authors R.E.Haurwitz, S.H.Sternberg, J.A.Doudna
compound source
Molecule: Csy4 Endoribonuclease
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Strain: Ucbpp-Pa14
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_vector: Phmgwa

Molecule: 5'-R(Upupcpapcpupgpcpcpgpupapupap Gpgpcpapgpc)-3';
Chain: B
Synonym: Crrna
Engineered: Yes

Synthetic: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.790 47.800 86.570 90.00 109.69 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


  • Primary referenceCsy4 relies on an unusual catalytic dyad to position and cleave CRISPR RNA., Haurwitz RE, Sternberg SH, Doudna JA, EMBO J. 2012 Apr 20. doi: 10.1038/emboj.2012.107. PMID:22522703
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (4al5.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 4AL5
  • CSU: Contacts of Structural Units for 4AL5
  • Structure Factors (121 Kb)
  • Retrieve 4AL5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AL5 from S2C, [Save to disk]
  • Re-refined 4al5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AL5 in 3D
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  • Visual 3D analysis of 4AL5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AL5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4al5] [4al5_A] [4al5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AL5
  • Community annotation for 4AL5 at PDBWiki (http://pdbwiki.org)
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