4ALG Signaling Protein date Mar 03, 2012
title N-Terminal Bromodomain Of Human Brd2 With Ibet-151
authors C.Chung, Y.Lamotte, F.Donche, A.Bouillot, O.Mirguet
compound source
Molecule: Bromodomain-Containing Protein 2
Chain: A
Fragment: N-Terminal Bromodomain, Residues 67-200
Synonym: Brd2, O27.1.1, Really Interesting New Gene 3 Prote
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.176 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.050 40.303 48.347 90.00 113.22 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 1GH, ACT, GOL BindingDB enzyme
Primary referenceIdentification of a novel series of BET family bromodomain inhibitors: binding mode and profile of I-BET151 (GSK1210151A)., Seal J, Lamotte Y, Donche F, Bouillot A, Mirguet O, Gellibert F, Nicodeme E, Krysa G, Kirilovsky J, Beinke S, McCleary S, Rioja I, Bamborough P, Chung CW, Gordon L, Lewis T, Walker AL, Cutler L, Lugo D, Wilson DM, Witherington J, Lee K, Prinjha RK, Bioorg Med Chem Lett. 2012 Apr 15;22(8):2968-72. Epub 2012 Feb 24. PMID:22437115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4alg.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 4ALG
  • CSU: Contacts of Structural Units for 4ALG
  • Structure Factors (800 Kb)
  • Retrieve 4ALG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ALG from S2C, [Save to disk]
  • Re-refined 4alg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ALG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ALG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ALG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4alg] [4alg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ALG: [BROMO ] by SMART
  • Other resources with information on 4ALG
  • Community annotation for 4ALG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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