4ALS Chitin-Binding Protein date Mar 05, 2012
title X-Ray Photoreduction Of Polysaccharide Monooxygenase Cbm33
authors M.Gudmundsson, M.Wu, T.Ishida, M.H.Momeni, G.Vaaje-Kolstad, V.Eij M.Sandgren
compound source
Molecule: Chitin Binding Protein
Chain: A
Fragment: Cbm33, Residues 29-194
Synonym: Polysaccharide Monooxygenase
Engineered: Yes
Organism_scientific: Enterococcus Faecalis
Organism_taxid: 1351
Strain: V582
Atcc: 700802
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Prset-B
symmetry Space Group: P 21 21 21
R_factor 0.156 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.435 48.609 68.496 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.47 Å
ligand CU, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and electronic snapshots during the transition from a Cu(II) to Cu(I) metal center of a lytic polysaccharide monooxygenase by X-ray photo-reduction., Gudmundsson M, Kim S, Wu M, Ishida T, Haddad Momeni M, Vaaje-Kolstad G, Lundberg D, Royant A, Stahlberg J, Eijsink VG, Beckham GT, Sandgren M, J Biol Chem. 2014 May 14. pii: jbc.M114.563494. PMID:24828494
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (4als.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 4ALS
  • CSU: Contacts of Structural Units for 4ALS
  • Structure Factors (317 Kb)
  • Retrieve 4ALS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ALS from S2C, [Save to disk]
  • Re-refined 4als structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ALS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ALS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ALS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4als_A] [4als]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ALS
  • Community annotation for 4ALS at PDBWiki (http://pdbwiki.org)

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