4AP5 Transferase date Mar 30, 2012
title Crystal Structure Of Human Pofut2
authors C.Chen, J.J.Keusch, D.Klein, D.Hess, J.Hofsteenge, H.Gut
compound source
Molecule: Gdp-Fucose Protein O-Fucosyltransferase 2
Chain: A, B
Synonym: Peptide-O-Fucosyltransferase 2, O-Fuct-2, Protein Fucosyltransferase 2;
Ec: 2.4.1.221
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_vector: Psectagb
symmetry Space Group: P 32 2 1
R_factor 0.174 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.628 118.628 196.227 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand CL, MG, NAG enzyme Transferase E.C.2.4.1.221 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of human POFUT2: insights into thrombospondin type 1 repeat fold and O-fucosylation., Chen CI, Keusch JJ, Klein D, Hess D, Hofsteenge J, Gut H, EMBO J. 2012 May 15. doi: 10.1038/emboj.2012.143. PMID:22588082
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]
  • Biological Unit Coordinates (4ap5.pdb1.gz) 271 Kb
  • LPC: Ligand-Protein Contacts for 4AP5
  • CSU: Contacts of Structural Units for 4AP5
  • Structure Factors (225 Kb)
  • Retrieve 4AP5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AP5 from S2C, [Save to disk]
  • Re-refined 4ap5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AP5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AP5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AP5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ap5] [4ap5_B] [4ap5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AP5
  • Community annotation for 4AP5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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