4AR4 Electron Transport date Apr 20, 2012
title Neutron Crystallographic Structure Of The Reduced Form Perde Pyrococcus Furiosus Rubredoxin To 1.38 Angstrom Resolution.
authors M.G.Cuypers, S.A.Mason, M.P.Blakeley, E.P.Mitchell, M.Haertlein, V.T.Forsyth
compound source
Molecule: Rubredoxin
Chain: A
Synonym: Rd
Engineered: Yes
Other_details: Reduced State (Fe II), Hydronium Ions, Carbo Deuterons
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.375 35.183 43.994 90.00 90.00 90.00
method Neutron Diffractionresolution 1.38 Å
ligand D3O, D8U, FE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceNear-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus furiosus Rubredoxin: Implication of Hydronium Ions and Protonation State Equilibria in Redox Changes., Cuypers MG, Mason SA, Blakeley MP, Mitchell EP, Haertlein M, Forsyth VT, Angew Chem Int Ed Engl. 2013 Jan 14;52(3):1022-5. doi: 10.1002/anie.201207071., Epub 2012 Dec 6. PMID:23225503
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (4ar4.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 4AR4
  • CSU: Contacts of Structural Units for 4AR4
  • Structure Factors (219 Kb)
  • Retrieve 4AR4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AR4 from S2C, [Save to disk]
  • View 4AR4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AR4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AR4, from MSDmotif at EBI
  • Fold representative 4ar4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ar4_A] [4ar4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AR4
  • Community annotation for 4AR4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science