4ATN Transferase date May 08, 2012
title Crystal Structure Of C2498 2'-O-Ribose Methyltransferase Rlm Escherichia Coli
authors A.S.Punekar, T.R.Shepherd, J.Liljeruhm, A.C.Forster, M.Selmer
compound source
Molecule: Ribosomal Rna Large Subunit Methyltransferase M
Chain: A
Synonym: 23s Rrna (Cytidine2498-2'-O)-Methyltransferase, 23 O-Ribose Methyltransferase Rlmm;
Ec: 2.1.1.186
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 469008
Strain: K-12
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pexp5-Cttopo
symmetry Space Group: P 31 2 1
R_factor 0.169 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.090 92.090 83.090 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand CSS, EDO, GOL, SO4 enzyme Transferase E.C.2.1.1.186 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of RlmM, the 2'O-ribose methyltransferase for C2498 of Escherichia coli 23S rRNA., Punekar AS, Shepherd TR, Liljeruhm J, Forster AC, Selmer M, Nucleic Acids Res. 2012 Aug 25. PMID:22923526
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4atn.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 4ATN
  • CSU: Contacts of Structural Units for 4ATN
  • Structure Factors (217 Kb)
  • Retrieve 4ATN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ATN from S2C, [Save to disk]
  • Re-refined 4atn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ATN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ATN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ATN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4atn_A] [4atn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ATN
  • Community annotation for 4ATN at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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