4ATZ Viral Protein De Novo Protein date May 11, 2012
title Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
authors P.R.E.Mittl, C.Hess, B.Dreier
compound source
Molecule: Fiber Protein
Chain: A, B, C
Synonym: Spike,Protein Iv
Engineered: Yes
 Organism_scientific: Human Adenovirus C Serotype 5
Organism_common: Hadv-5
Organism_taxid: 28285
Gene: L5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Designed Ankyrin Repeat Protein
Chain: D, E, F
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.600 112.100 129.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDevelopment of a generic adenovirus delivery system based on structure-guided design of bispecific trimeric DARPin adapters., Dreier B, Honegger A, Hess C, Nagy-Davidescu G, Mittl PR, Grutter MG, Belousova N, Mikheeva G, Krasnykh V, Pluckthun A, Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):E869-77. doi:, 10.1073/pnas.1213653110. Epub 2013 Feb 19. PMID:23431166
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (333 Kb) [Save to disk]
  • Biological Unit Coordinates (4atz.pdb1.gz) 325 Kb
  • CSU: Contacts of Structural Units for 4ATZ
  • Structure Factors (1649 Kb)
  • Retrieve 4ATZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ATZ from S2C, [Save to disk]
  • Re-refined 4atz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ATZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ATZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ATZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4atz_A] [4atz_D] [4atz_F] [4atz_B] [4atz_C] [4atz] [4atz_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ATZ: [ANK ] by SMART
    • Other resources with information on 4ATZ
  • Community annotation for 4ATZ at PDBWiki (http://pdbwiki.org)

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