4AU0 Hydrolase date May 11, 2012
title Hypocrea Jecorina Cel6a D221a Mutant Soaked With 6-Chloro-4- Methylumbelliferyl-Beta-Cellobioside
authors M.Wu, W.Nerinckx, K.Piens, T.Ishida, H.Hansson, J.Stahlberg, M.San
compound source
Molecule: Exoglucanase 2
Chain: A, B
Fragment: Catalytic Domain, Residues 109-471
Synonym: Cbhii, 1\,4-Beta-Cellobiohydrolase, Exocellobiohyd Exoglucanase II;
Ec: 3.2.1.91
Engineered: Yes
Mutation: Yes
 Organism_scientific: Hypocrea Jecorina
Organism_taxid: 51453
Expression_system: Hypocrea Jecorina
Expression_system_taxid: 51453
symmetry Space Group: P 1
R_factor 0.191 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.980 52.480 66.450 76.66 79.02 76.02
method X-Ray Diffractionresolution 1.70 Å
ligand BGC, MAN, NAG, XZZ enzyme Hydrolase E.C.3.2.1.91 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRational design, synthesis, evaluation and enzyme-substrate structures of improved fluorogenic substrates for family 6 glycoside hydrolases., Wu M, Nerinckx W, Piens K, Ishida T, Hansson H, Sandgren M, Stahlberg J, FEBS J. 2013 Jan;280(1):184-98. doi: 10.1111/febs.12060. Epub 2012 Dec 7. PMID:23137336
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (4au0.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (4au0.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 4AU0
  • CSU: Contacts of Structural Units for 4AU0
  • Structure Factors (2351 Kb)
  • Retrieve 4AU0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AU0 from S2C, [Save to disk]
  • Re-refined 4au0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4AU0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4AU0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AU0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4au0_B] [4au0_A] [4au0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4AU0
  • Community annotation for 4AU0 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science