4AVO	Hydrolase	date	May 28, 2012
title	Thermobifida Fusca Cellobiohydrolase Cel6b Catalytic Mutant Cocrystallized With Cellobiose
authors	M.Wu, T.V.Vuong, D.B.Wilson, M.Sandgren, J.Stahlberg, H.Hansson
compound		source
Molecule: Beta-1,4-Exocellulase Chain: A Fragment: Catalytic Domain, Residues 177-596 Synonym: 1\,4-Beta-Cellobiosidase Ec: 3.2.1.91 Engineered: Yes Mutation: Yes		Organism_scientific: Thermobifida Fusca Organism_taxid: 269800 Strain: Yx Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Rpil
symmetry	Space Group: P 1 21 1	R_factor 0.155 R_Free 0.191
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.680 92.210 49.620 90.00 111.92 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ACT, BGC, CA	enzyme	Hydrolase E.C.3.2.1.91 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Loop motions important to product expulsion in the Thermobifida fusca glycoside hydrolase Family 6 cellobiohydrolase from structural and computational studies., Wu M, Bu L, Vuong TV, Wilson DB, Crowley MF, Sandgren M, Stahlberg J, Beckham GT, Hansson H, J Biol Chem. 2013 Sep 30. PMID:24085303

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (4avo.pdb1.gz) 72 Kb LPC: Ligand-Protein Contacts for 4AVO CSU: Contacts of Structural Units for 4AVO Structure Factors (442 Kb) Retrieve 4AVO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AVO from S2C, [Save to disk] Re-refined 4avo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AVO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4AVO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AVO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4avo_A] [4avo] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4AVO

Community annotation for 4AVO at PDBWiki (http://pdbwiki.org)

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