4AX4 Hydrolase date Jun 08, 2012
title Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
authors Z.Szeltner, T.Juhasz, I.Szamosi, D.Rea, V.Fulop, K.Modos, L.Julian L.Polgar
compound source
Molecule: Prolyl Oligopeptidase
Chain: A
Synonym: Pe, Post-Proline Cleaving Enzyme
Ec: 3.4.21.26
Engineered: Yes
Mutation: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Brain
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.080 99.080 110.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand GOL enzyme Hydrolase E.C.3.4.21.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe loops facing the active site of prolyl oligopeptidase are crucial components in substrate gating and specificity., Szeltner Z, Juhasz T, Szamosi I, Rea D, Fulop V, Modos K, Juliano L, Polgar L, Biochim Biophys Acta. 2012 Aug 19. PMID:22940581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (4ax4.pdb1.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 4AX4
  • CSU: Contacts of Structural Units for 4AX4
  • Structure Factors (758 Kb)
  • Retrieve 4AX4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AX4 from S2C, [Save to disk]
  • Re-refined 4ax4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AX4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AX4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AX4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ax4_A] [4ax4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4AX4
  • Community annotation for 4AX4 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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