4AXL	Hydrolase	date	Jun 13, 2012
title	Human Cathepsin L Apo Form With Zn
authors	D.W.Banner, J.Benz
compound		source
Molecule: Cathepsin L1 Chain: A Fragment: Catalytic, Residues 114-333 Synonym: Cathepsin L, Major Excreted Protein, Mep, Cathepsi Chain, Cathepsin L1 Light Chain; Ec: 3.4.22.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61 2 2	R_factor 0.188 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.201 111.201 85.891 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.92 Å
ligand	ACT, GOL, ZN	enzyme	Hydrolase E.C.3.4.22.15 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Optimization of Triazine Nitriles as Rhodesain Inhibitors: Structure-Activity Relationships, Bioisosteric Imidazopyridine Nitriles, and X-ray Crystal Structure Analysis with Human Cathepsin L., Ehmke V, Winkler E, Banner DW, Haap W, Schweizer WB, Rottmann M, Kaiser M, Freymond C, Schirmeister T, Diederich F, ChemMedChem. 2013 Jun;8(6):967-75. doi: 10.1002/cmdc.201300112. Epub 2013 May 9. PMID:23658062

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (4axl.pdb1.gz) 76 Kb LPC: Ligand-Protein Contacts for 4AXL CSU: Contacts of Structural Units for 4AXL Structure Factors (440 Kb) Retrieve 4AXL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AXL from S2C, [Save to disk] Re-refined 4axl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AXL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4AXL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AXL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4axl] [4axl_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4AXL: [Pept_C1 ] by SMART

Other resources with information on 4AXL

Community annotation for 4AXL at PDBWiki (http://pdbwiki.org)

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