4AXW Cell Adhesion date Jun 14, 2012
title Crystal Structure Of Mouse Cadherin-23 Ec1-2 And Protocadher 2, Form I 2.2a.
authors M.Sotomayor, W.Weihofen, R.Gaudet, D.P.Corey
compound source
Molecule: Cadherin-23
Chain: A
Fragment: Ec1-2, Residues 24-228
Synonym: Otocadherin
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet21a

Molecule: Protocadherin-15
Chain: B
Fragment: Ec1-2, Residues 27-259
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet21a
symmetry Space Group: C 1 2 1
R_factor 0.175 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.649 40.468 85.187 90.00 102.92 90.00
method X-Ray Diffractionresolution 2.23 Å
ligand CA, CL, GOL, K, MES, PG4 enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of a force-conveying cadherin bond essential for inner-ear mechanotransduction., Sotomayor M, Weihofen WA, Gaudet R, Corey DP, Nature. 2012 Nov 7. doi: 10.1038/nature11590. PMID:23135401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (4axw.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 4AXW
  • CSU: Contacts of Structural Units for 4AXW
  • Structure Factors (411 Kb)
  • Retrieve 4AXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AXW from S2C, [Save to disk]
  • Re-refined 4axw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AXW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AXW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4axw_A] [4axw_B] [4axw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AXW: [CA ] by SMART
  • Other resources with information on 4AXW
  • Community annotation for 4AXW at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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