4AY5	Transferase Peptide	date	Jun 18, 2012
title	Human O-Glcnac Transferase (Ogt) In Complex With Udp And Gly
authors	M.Schimpl, X.Zheng, D.E.Blair, A.W.Schuettelkopf, I.Navratilova, T.Aristotelous, A.T.Ferenbach, M.A.Macnaughtan, V.S.Borodkin, D Aalten
compound		source
Molecule: Udp-N-Acetylglucosamine--Peptide N-Acetylglucosam Transferase 110 Kda Subunit; Chain: A, B, C, D Fragment: Tpr (Truncated) And Catalytic Domain, Residues 31 Synonym: O-Glcnac Transferase Subunit P110, O-Linked N-Acet Glucosamine Transferase 110 Kda Subunit, Ogt; Ec: 2.4.1.255 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_variant: Arcticexpress (Ril) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p1
Molecule: Gtab1tide Chain: I, J, K, L Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 3 2 1	R_factor 0.174 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 274.170 274.170 142.150 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.15 Å
ligand	NAG, UDP	enzyme	Transferase E.C.2.4.1.255 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	O-GlcNAc transferase invokes nucleotide sugar pyrophosphate participation in catalysis., Schimpl M, Zheng X, Borodkin VS, Blair DE, Ferenbach AT, Schuttelkopf AW, Navratilova I, Aristotelous T, Albarbarawi O, Robinson DA, Macnaughtan MA, van Aalten DM, Nat Chem Biol. 2012 Dec;8(12):969-74. doi: 10.1038/nchembio.1108. Epub 2012 Oct, 28. PMID:23103942

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk] Biological Unit Coordinates (4ay5.pdb1.gz) 117 Kb Biological Unit Coordinates (4ay5.pdb2.gz) 116 Kb Biological Unit Coordinates (4ay5.pdb3.gz) 116 Kb Biological Unit Coordinates (4ay5.pdb4.gz) 117 Kb LPC: Ligand-Protein Contacts for 4AY5 CSU: Contacts of Structural Units for 4AY5 Structure Factors (1588 Kb) Retrieve 4AY5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AY5 from S2C, [Save to disk] Re-refined 4ay5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AY5 in 3D

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Visual 3D analysis of 4AY5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AY5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ay5_B] [4ay5] [4ay5_C] [4ay5_D] [4ay5_K] [4ay5_L] [4ay5_I] [4ay5_J] [4ay5_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4AY5: [TPR ] by SMART

Other resources with information on 4AY5

Community annotation for 4AY5 at PDBWiki (http://pdbwiki.org)

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