OCA Atlas for 4AY5

4AY5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NAG, UDP

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C, B, D

Primary reference

O-GlcNAc transferase invokes nucleotide sugar pyrophosphate participation in catalysis., Schimpl M, Zheng X, Borodkin VS, Blair DE, Ferenbach AT, Schuttelkopf AW, Navratilova I, Aristotelous T, Albarbarawi O, Robinson DA, Macnaughtan MA, van Aalten DM, Nat Chem Biol. 2012 Dec;8(12):969-74. doi: 10.1038/nchembio.1108. Epub 2012 Oct, 28. PMID:23103942

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk]

Biological Unit Coordinates (4ay5.pdb1.gz) 117 Kb

Biological Unit Coordinates (4ay5.pdb2.gz) 116 Kb

Biological Unit Coordinates (4ay5.pdb3.gz) 116 Kb

Biological Unit Coordinates (4ay5.pdb4.gz) 117 Kb

LPC: Ligand-Protein Contacts for 4AY5

CSU: Contacts of Structural Units for 4AY5

Structure Factors (1588 Kb)

Retrieve 4AY5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4AY5 from S2C, [Save to disk]

Re-refined 4ay5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AY5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ay5] [4ay5_A] [4ay5_B] [4ay5_C] [4ay5_D] [4ay5_I] [4ay5_J] [4ay5_K] [4ay5_L]

SWISS-PROT database:

Domain found in 4AY5: [TPR ] by SMART

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