4AY9 Hormone Receptor date Jun 19, 2012
title Structure Of Follicle-Stimulating Hormone In Complex With The Entire Ectodomain Of Its Receptor
authors X.Jiang, H.Liu, X.Chen, X.He
compound source
Molecule: Glycoprotein Hormones, Alpha Polypeptide
Chain: A, D, G
Fragment: Residues 25-116
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvlad6
Other_details: Bacman System

Molecule: Follitropin Subunit Beta
Chain: B, E, H
Synonym: Follicle-Stimulating Hormone Beta Subunit, Fsh-B, Fsh-Beta, Follitropin Beta Chain;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvlad6
Other_details: Bacman System

Molecule: Follicle-Stimulating Hormone Receptor
Chain: X, Y, Z
Fragment: Residues 17-366
Synonym: Fsh-R, Follitropin Receptor
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvlad6
Other_details: Bacman System
symmetry Space Group: P 1
R_factor 0.23508 R_Free 0.26901
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.716 95.478 95.675 60.30 80.02 75.35
method X-Ray Diffractionresolution 2.50 Å
ligand NAG, TYS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, G


E, B, H


X, Y, Z


Primary referenceStructure of follicle-stimulating hormone in complex with the entire ectodomain of its receptor., Jiang X, Liu H, Chen X, Chen PH, Fischer D, Sriraman V, Yu HN, Arkinstall S, He X, Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12491-6. Epub 2012 Jul 16. PMID:22802634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (4ay9.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (4ay9.pdb2.gz) 86 Kb
  • Biological Unit Coordinates (4ay9.pdb3.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 4AY9
  • CSU: Contacts of Structural Units for 4AY9
  • Structure Factors (1032 Kb)
  • Retrieve 4AY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AY9 from S2C, [Save to disk]
  • Re-refined 4ay9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AY9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4AY9, from MSDmotif at EBI
  • Fold representative 4ay9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ay9_B] [4ay9_D] [4ay9_A] [4ay9_X] [4ay9] [4ay9_Y] [4ay9_G] [4ay9_Z] [4ay9_E] [4ay9_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4AY9: [GHA] [GHB] [LRRNT ] by SMART
  • Other resources with information on 4AY9
  • Community annotation for 4AY9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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