4AYM	Immune System	date	Jun 21, 2012
title	Structure Of A Complex Between Ccps 6 And 7 Of Human Complem H And Neisseria Meningitidis Fhbp Variant 3 P106a Mutant
authors	S.Johnson, L.Tan, S.Van Der Veen, J.Caesar, E.Goicoechea De Jorg R.J.Everett, X.Bai, R.M.Exley, P.N.Ward, N.Ruivo, K.Trivedi, E.Cu R.Jones, L.Newham, D.Staunton, R.Borrow, M.Pickering, S.M.Lea, C.
compound		source
Molecule: Complement Factor H Chain: A, B, E, F Fragment: Ccps 6 And 7, Residues 321-443 Synonym: H Factor 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Variant: His402 Polymorphism Expression_system: Escherichia Coli Expression_system_taxid: 37762 Expression_system_strain: B Expression_system_variant: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-14b
Molecule: Factor H Binding Protein Chain: C, D Fragment: Residues 32-281 Synonym: Lipoprotein Gna1870 Engineered: Yes Mutation: Yes		Organism_scientific: Neisseria Meningitidis Mc58 Organism_taxid: 122586 Variant: P28 Expression_system: Escherichia Coli Expression_system_taxid: 37762 Expression_system_strain: B Expression_system_variant: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-14b
symmetry	Space Group: C 2 2 21	R_factor 0.254 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.090 83.490 361.430 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
Gene Ontology	Chain Function Process Component D, C
Primary reference	Design and Evaluation of Meningococcal Vaccines through Structure-Based Modification of Host and Pathogen Molecules., Johnson S, Tan L, van der Veen S, Caesar J, Goicoechea De Jorge E, Harding RJ, Bai X, Exley RM, Ward PN, Ruivo N, Trivedi K, Cumber E, Jones R, Newham L, Staunton D, Ufret-Vincenty R, Borrow R, Pickering MC, Lea SM, Tang CM, PLoS Pathog. 2012 Oct;8(10):e1002981. doi: 10.1371/journal.ppat.1002981. Epub, 2012 Oct 25. PMID:23133374

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk] Biological Unit Coordinates (4aym.pdb1.gz) 58 Kb Biological Unit Coordinates (4aym.pdb2.gz) 59 Kb Biological Unit Coordinates (4aym.pdb3.gz) 23 Kb Biological Unit Coordinates (4aym.pdb4.gz) 23 Kb CSU: Contacts of Structural Units for 4AYM Structure Factors (1106 Kb) Retrieve 4AYM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AYM from S2C, [Save to disk] Re-refined 4aym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AYM in 3D

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Visual 3D analysis of 4AYM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AYM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4aym_E] [4aym_A] [4aym] [4aym_B] [4aym_F] [4aym_C] [4aym_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4AYM: [CCP ] by SMART

Other resources with information on 4AYM

Community annotation for 4AYM at PDBWiki (http://pdbwiki.org)

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