4AZ0	Hydrolase	date	Jun 22, 2012
title	Crystal Structure Of Cathepsin A, Complexed With 8a.
authors	S.Ruf, C.Buning, H.Schreuder, G.Horstick, W.Linz, T.Olpp, J.Perner K.Hiss, K.Kroll, A.Kannt, M.Kohlmann, D.Linz, T.Huebschle, H.Ruet K.Wirth, T.Schmidt, T.Sadowski
compound		source
Molecule: Lysosomal Protective Protein 32 Kda Chain Chain: A Synonym: Carboxypeptidase C, Carboxypeptidase L, Cathepsin Protective Protein Cathepsin A, Ppca, Protective Protein Fo Galactosidase; Ec: 3.4.16.5 Engineered: Yes Other_details: Activated With Trypsin-Sepharose		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_vector: Pvl1393
Molecule: Lysosomal Protective Protein 20 Kda Chain Chain: B Synonym: Carboxypeptidase C, Carboxypeptidase L, Cathepsin Protective Protein Cathepsin A, Ppca, Protective Protein Fo Galactosidase; Ec: 3.4.16.5 Engineered: Yes Other_details: Activated With Trypsin-Sepharose		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_vector: Pvl1393
symmetry	Space Group: C 1 2 1	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.530 101.638 48.179 90.00 101.97 90.00
method	X-Ray Diffraction	resolution	2.17 Å
ligand	CD, NAG, S61	enzyme	Hydrolase E.C.3.4.16.5 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Novel beta-Amino Acid Derivatives as Inhibitors of Cathepsin A., Ruf S, Buning C, Schreuder H, Horstick G, Linz W, Olpp T, Pernerstorfer J, Hiss K, Kroll K, Kannt A, Kohlmann M, Linz D, Hubschle T, Rutten H, Wirth K, Schmidt T, Sadowski T, J Med Chem. 2012 Sep 13;55(17):7636-49. Epub 2012 Aug 16. PMID:22861813

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (4az0.pdb1.gz) 145 Kb LPC: Ligand-Protein Contacts for 4AZ0 CSU: Contacts of Structural Units for 4AZ0 Structure Factors (172 Kb) Retrieve 4AZ0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4AZ0 from S2C, [Save to disk] Re-refined 4az0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4AZ0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4AZ0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4AZ0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4az0_A] [4az0_B] [4az0] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4AZ0

Community annotation for 4AZ0 at PDBWiki (http://pdbwiki.org)

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