4AZV Transferase date Jun 26, 2012
title Co-Crystal Structure Of Wbdd And Kinase Inhibitor Gw435821x.
authors G.Hagelueken, H.Huang, J.H.Naismith
compound source
Molecule: Wbdd
Chain: A
Fragment: Residues 2-556
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Orf708
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 3
R_factor 0.2225 R_Free 0.2653
crystal
cell
length a length b length c angle alpha angle beta angle gamma
159.320 159.320 159.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.29 Å
ligand CL, SAM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of WbdD; a bifunctional kinase and methyltransferase that regulates the chain length of the O antigen in Escherichia coli O9a., Hagelueken G, Huang H, Clarke BR, Lebl T, Whitfield C, Naismith JH, Mol Microbiol. 2012 Sep 13. doi: 10.1111/mmi.12014. PMID:22970759
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (4azv.pdb1.gz) 1698 Kb
  • LPC: Ligand-Protein Contacts for 4AZV
  • CSU: Contacts of Structural Units for 4AZV
  • Structure Factors (168 Kb)
  • Retrieve 4AZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4AZV from S2C, [Save to disk]
  • Re-refined 4azv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4AZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4AZV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4AZV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4azv_A] [4azv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4AZV: [STYKc ] by SMART
  • Other resources with information on 4AZV
  • Community annotation for 4AZV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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