4B00 Hydrolase date Jun 27, 2012
title Design And Synthesis Of Bace1 Inhibitors With In Vivo Brain Of Beta-Amyloid Peptides (Compound (R)-41)
authors B.M.Swahn, K.Kolmodin, S.Karlstrom, S.Von Berg, P.Soderman, J.Hol S.Berg, J.Lindstrom, M.Sundstrom, D.Turek, J.Kihlstrom, C.Slivo, L.Andersson, D.Pyring, L.Ohberg, A.Kers, K.Bogar, M.Bergh, L.L.Ol J.Janson, S.Eketjall, B.Georgievska, F.Jeppsson, J.Falting
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Residues 43-453
Synonym: Aspartyl Protease 2, Asp2, Beta-Site Amyloid Precu Protein Cleaving Enzyme 1, Beta-Site App Cleaving Enzyme 1, 2, Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet11a
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.956 75.910 104.646 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand ACT, I6X BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and Synthesis of beta-Site Amyloid Precursor Protein Cleaving Enzyme (BACE1) Inhibitors with in Vivo Brain Reduction of beta-Amyloid Peptides., Swahn BM, Kolmodin K, Karlstrom S, von Berg S, Soderman P, Holenz J, Berg S, Lindstrom J, Sundstrom M, Turek D, Kihlstrom J, Slivo C, Andersson L, Pyring D, Rotticci D, Ohberg L, Kers A, Bogar K, von Kieseritzky F, Bergh M, Olsson LL, Janson J, Eketjall S, Georgievska B, Jeppsson F, Falting J, J Med Chem. 2012 Sep 17. PMID:22924815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (4b00.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 4B00
  • CSU: Contacts of Structural Units for 4B00
  • Structure Factors (713 Kb)
  • Retrieve 4B00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B00 from S2C, [Save to disk]
  • Re-refined 4b00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B00, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b00] [4b00_A]
  • SWISS-PROT database:
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  • Other resources with information on 4B00
  • Community annotation for 4B00 at PDBWiki (http://pdbwiki.org)
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