4B3M date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand K, MG, ON0, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


V


Primary reference4'-O-substitutions determine selectivity of aminoglycoside antibiotics., Perez-Fernandez D, Shcherbakov D, Matt T, Leong NC, Kudyba I, Duscha S, Boukari H, Patak R, Dubbaka SR, Lang K, Meyer M, Akbergenov R, Freihofer P, Vaddi S, Thommes P, Ramakrishnan V, Vasella A, Bottger EC, Nat Commun. 2014 Jan 28;5:3112. doi: 10.1038/ncomms4112. PMID:24473108
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1027 Kb) [Save to disk]
  • Biological Unit Coordinates (4b3m.pdb1.gz) 1010 Kb
  • LPC: Ligand-Protein Contacts for 4B3M
  • CSU: Contacts of Structural Units for 4B3M
  • Structure Factors (2761 Kb)
  • Retrieve 4B3M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B3M from S2C, [Save to disk]
  • Re-refined 4b3m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4B3M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b3m] [4b3m_A] [4b3m_B] [4b3m_C] [4b3m_D] [4b3m_E] [4b3m_F] [4b3m_G] [4b3m_H] [4b3m_I] [4b3m_J] [4b3m_K] [4b3m_L] [4b3m_M] [4b3m_N] [4b3m_O] [4b3m_P] [4b3m_Q] [4b3m_R] [4b3m_S] [4b3m_T] [4b3m_V] [4b3m_W] [4b3m_Z]
  • SWISS-PROT database:
  • Domains found in 4B3M: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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