4B5J Hydrolase Dna date Aug 03, 2012
title Neisseria Ap Endonuclease Bound To The Substrate With An Orp Adenine Base
authors D.Lu, J.Silhan, J.T.Macdonald, E.P.Carpenter, K.Jensen, C.M.Tang, G.S.Baldwin, P.S.Freemont
compound source
Molecule: Putative Exodeoxyribonuclease
Chain: A
Synonym: Neisseria Ap Endonuclease
Engineered: Yes
Organism_scientific: Neisseria Meningitidis
Organism_taxid: 487
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-D(Gpcptpapcp(3dr)Pcpaptpcpgp)-3'
Chain: U
Engineered: Yes

Synthetic: Yes
Organism_scientific: Neisseria Meningitidis
Organism_taxid: 487

Molecule: 5'-D(Cpgpaptpgpapgptpapgpcp)-3'
Chain: V
Engineered: Yes

Synthetic: Yes
Organism_scientific: Neisseria Meningitidis
Organism_taxid: 487
symmetry Space Group: P 43 21 2
R_factor 0.208 R_Free 0.259
length a length b length c angle alpha angle beta angle gamma
69.880 69.880 122.270 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 3DR enzyme Hydrolase E.C. BRENDA
  • nuclease activity
  • endonuclease activity
  • phosphodiesterase I activity...
  • double-stranded DNA 3'-5' ex...

  • Primary referenceStructural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis., Lu D, Silhan J, Macdonald JT, Carpenter EP, Jensen K, Tang CM, Baldwin GS, Freemont PS, Proc Natl Acad Sci U S A. 2012 Oct 3. PMID:23035246
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (4b5j.pdb1.gz) 108 Kb
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  • View one-letter amino acid or nucleotide sequence for each chain: [4b5j_V] [4b5j_U] [4b5j] [4b5j_A]
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