4B6G Hydrolase date Aug 13, 2012
title The Crystal Structure Of The Neisserial Esterase D.
authors R.M.Counago, B.Kobe
compound source
Molecule: Putative Esterase
Chain: A, B
Synonym: S-Formylglutathione Hydrolase Protein
Ec: 3.1.2.12
Engineered: Yes
Organism_scientific: Neisseria Meningitidis Mc58
Organism_taxid: 122586
Strain: C311
Variant: Number 3
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmsgc7
symmetry Space Group: P 65 2 2
R_factor 0.143 R_Free 0.154
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.268 111.268 169.861 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.40 Å
ligand
enzyme Hydrolase E.C.3.1.2.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA glutathione-dependent detoxification system is required for formaldehyde resistance and optimal survival of <i>Neisseria meningitidis</i> in biofilms., Chen NH, Counago RM, Djoko KY, Jennings MP, Apicella MA, Kobe B, McEwan AG, Antioxid Redox Signal. 2012 Sep 3. PMID:22937752
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]
  • Biological Unit Coordinates (4b6g.pdb1.gz) 138 Kb
  • Biological Unit Coordinates (4b6g.pdb2.gz) 135 Kb
  • CSU: Contacts of Structural Units for 4B6G
  • Structure Factors (1116 Kb)
  • Retrieve 4B6G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B6G from S2C, [Save to disk]
  • Re-refined 4b6g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B6G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B6G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B6G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b6g_A] [4b6g_B] [4b6g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B6G
  • Community annotation for 4B6G at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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