4B71 Hydrolase date Aug 16, 2012
title Discovery Of An Allosteric Mechanism For The Regulation Of Hcv Ns3 Protein Function
authors S.M.Saalau-Bethell, A.J.Woodhead, G.Chessari, M.G.Carr, J.Coyle, S.D.Hiscock, C.W.Murray, P.Pathuri, S.J.Rich, C.J.Richardson, P.A.Williams, H.Jhoti
compound source
Molecule: Non-Structural Protein 4a, Serine Protease Ns3
Chain: A, B
Fragment: Residues 1678-1690 And 1029-1657
Synonym: Ns4a, P8, Hepacivirin, Ns3p, P70
Ec: 3.4.21.98, 3.6.1.15, 3.6.4.13
Engineered: Yes
Other_details: The Protein Crystallised Is A Fusion Protein Comprising A Hexa-His Tag, A Linker Region, A 11 Residue N Cofactor Peptide And The Ns3 Protein
Organism_scientific: Hepatitis C Virus (Isolate Bk)
Organism_taxid: 11105
Strain: Genotype 1b
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(Be3)
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28b
symmetry Space Group: P 21 21 21
R_factor 0.18183 R_Free 0.27443
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.127 110.028 142.501 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand DJL enzyme Hydrolase E.C.3.4.21.98 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of an allosteric mechanism for the regulation of HCV NS3 protein function., Saalau-Bethell SM, Woodhead AJ, Chessari G, Carr MG, Coyle J, Graham B, Hiscock SD, Murray CW, Pathuri P, Rich SJ, Richardson CJ, Williams PA, Jhoti H, Nat Chem Biol. 2012 Sep 30. doi: 10.1038/nchembio.1081. PMID:23023261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (4b71.pdb1.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 4B71
  • CSU: Contacts of Structural Units for 4B71
  • Structure Factors (728 Kb)
  • Retrieve 4B71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B71 from S2C, [Save to disk]
  • Re-refined 4b71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B71 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B71
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B71, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b71_B] [4b71_A] [4b71]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B71: [DEXDc ] by SMART
  • Other resources with information on 4B71
  • Community annotation for 4B71 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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