4B7G Oxidoreductase date Aug 20, 2012
title Structure Of A Bacterial Catalase
authors A.Gumiero, M.Walsh
compound source
Molecule: Catalase
Chain: A, B, C, D
Ec: 1.11.1.6
 Organism_scientific: Corynebacterium Glutamicum
Organism_taxid: 1718
Other_details: Purified Protein Purchased From Sigma Aldric
symmetry Space Group: P 63
R_factor 0.1330 R_Free 0.1743
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.751 151.751 157.682 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, HEM, NDP enzyme Oxidoreductase E.C.1.11.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA structural and dynamic investigation of the inhibition of catalase by nitric oxide., Candelaresi M, Gumiero A, Adamczyk K, Robb K, Bellota-Anton C, Sangal V, Munnoch J, Greetham GM, Towrie M, Hoskisson PA, Parker AW, Tucker NP, Walsh MA, Hunt NT, Org Biomol Chem. 2013 Nov 28;11(44):7778-88. doi: 10.1039/c3ob41977k. Epub 2013, Oct 11. PMID:24121528
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (399 Kb) [Save to disk]
  • Biological Unit Coordinates (4b7g.pdb1.gz) 389 Kb
  • LPC: Ligand-Protein Contacts for 4B7G
  • CSU: Contacts of Structural Units for 4B7G
  • Structure Factors (3511 Kb)
  • Retrieve 4B7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B7G from S2C, [Save to disk]
  • Re-refined 4b7g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4B7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4B7G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B7G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b7g_C] [4b7g_D] [4b7g_A] [4b7g_B] [4b7g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B7G: [Catalase ] by SMART
    • Other resources with information on 4B7G
  • Community annotation for 4B7G at PDBWiki (http://pdbwiki.org)

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