4B7K	Oxidoreductase	date	Aug 20, 2012
title	Factor Inhibiting Hif-1 Alpha In Complex With Consensus Anky Domain-Ser Peptide (20-Mer)
authors	R.Chowdhury, W.Ge, C.J.Schofield
compound		source
Molecule: Hypoxia-Inducible Factor 1-Alpha Inhibitor Chain: A Synonym: Factor Inhibiting Hif, Factor Inhibiting Hif-1, Fi Hypoxia-Inducible Factor Asparagine Hydroxylase; Ec: 1.14.11.16, 1.14.11.30 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet28a
Molecule: Consensus Ankyrin Repeat Domain-Ser Chain: B Engineered: Yes Other_details: Synthetic Peptide (20-Mer)		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 41 21 2	R_factor 0.225 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.355 86.355 148.308 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.39 Å
ligand	OGA, SO4, ZN BindingDB	enzyme	Oxidoreductase E.C.1.14.11.16 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Substrate Selectivity Analyses of Factor Inhibiting Hypoxia-Inducible Factor., Yang M, Hardy AP, Chowdhury R, Loik ND, Scotti JS, McCullagh JS, Claridge TD, McDonough MA, Ge W, Schofield CJ, Angew Chem Int Ed Engl. 2013 Jan 7. doi: 10.1002/anie.201208046. PMID:23296631

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (4b7k.pdb1.gz) 118 Kb LPC: Ligand-Protein Contacts for 4B7K CSU: Contacts of Structural Units for 4B7K Structure Factors (539 Kb) Retrieve 4B7K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4B7K from S2C, [Save to disk] Re-refined 4b7k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4B7K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4B7K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4B7K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4b7k_B] [4b7k_A] [4b7k] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4B7K: [JmjC ] by SMART

Other resources with information on 4B7K

Community annotation for 4B7K at PDBWiki (http://pdbwiki.org)

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