4B96 Sugar Binding Protein date Sep 02, 2012
title Family 3b Carbohydrate-Binding Module From The Biomass Sensoring System Of Clostridium Clariflavum
authors O.Yaniv, Y.H.K.Reddy, H.Yoffe, L.J.W.Shimon, E.A.Bayer, R.Lamed, F
compound source
Molecule: Cellulose Binding Domain-Containing Protein
Chain: A
Fragment: Residues 333-480
Engineered: Yes
Organism_scientific: Clostridium Clariflavum
Organism_taxid: 288965
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
Other_details: German Collection Of Microorganisms (Dsm) 19
symmetry Space Group: P 65 2 2
R_factor 0.1528 R_Free 0.1889
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.212 135.212 54.323 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.91 Å
ligand CA, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4b96.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 4B96
  • CSU: Contacts of Structural Units for 4B96
  • Structure Factors (439 Kb)
  • Retrieve 4B96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B96 from S2C, [Save to disk]
  • Re-refined 4b96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B96
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B96, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b96] [4b96_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4B96: [CBM_3 ] by SMART
  • Other resources with information on 4B96
  • Community annotation for 4B96 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science