4B9A Hydrolase date Sep 03, 2012
title Structure Of A Putative Epoxide Hydrolase From Pseudomonas A
authors J.W.Schmidberger, R.Schnell, G.Schneider
compound source
Molecule: Probable Epoxide Hydrolase
Chain: A
Synonym: Pa2086
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28
symmetry Space Group: P 41 21 2
R_factor 0.111 R_Free 0.138
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.910 83.910 140.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe AEROPATH project targeting Pseudomonas aeruginosa: crystallographic studies for assessment of potential targets in early-stage drug discovery., Moynie L, Schnell R, McMahon SA, Sandalova T, Boulkerou WA, Schmidberger JW, Alphey M, Cukier C, Duthie F, Kopec J, Liu H, Jacewicz A, Hunter WN, Naismith JH, Schneider G, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jan 1;69(Pt 1):25-34. doi:, 10.1107/S1744309112044739. Epub 2012 Dec 25. PMID:23295481
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4b9a.pdb1.gz) 234 Kb
  • LPC: Ligand-Protein Contacts for 4B9A
  • CSU: Contacts of Structural Units for 4B9A
  • Structure Factors (1227 Kb)
  • Retrieve 4B9A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4B9A from S2C, [Save to disk]
  • Re-refined 4b9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4B9A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4B9A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4B9A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4b9a] [4b9a_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4B9A
  • Community annotation for 4B9A at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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