4BAH	Hydrolase	date	Sep 14, 2012
title	Thrombin In Complex With Inhibitor
authors	Y.Xue, D.Musil
compound		source
Molecule: Thrombin Light Chain Chain: A Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Thrombin Heavy Chain Chain: B Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Hirudin Variant-1 Chain: D Fragment: Residues 62-71 Synonym: Hirudin-1, Hirudin-I, Lepirudin Engineered: Yes		Synthetic: Yes Organism_scientific: Hirudo Medicinalis Organism_taxid: 6421
symmetry	Space Group: C 1 2 1	R_factor 0.161 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.410 71.510 72.160 90.00 100.34 90.00
method	X-Ray Diffraction	resolution	1.94 Å
ligand	MEL, NA, NAG, TYS BindingDB	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Identification of Structure-Kinetic and Structure-Thermodynamic Relationships for Thrombin Inhibitors., Winquist J, Geschwindner S, Xue Y, Gustavsson L, Musil D, Deinum J, Danielson UH, Biochemistry. 2013 Jan 4. PMID:23290007

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (4bah.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 4BAH CSU: Contacts of Structural Units for 4BAH Structure Factors (328 Kb) Retrieve 4BAH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BAH from S2C, [Save to disk] Re-refined 4bah structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BAH in 3D

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Visual 3D analysis of 4BAH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BAH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bah] [4bah_A] [4bah_D] [4bah_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4BAH: [Tryp_SPc ] by SMART

Other resources with information on 4BAH

Community annotation for 4BAH at PDBWiki (http://pdbwiki.org)

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