4BCU Virus date Oct 03, 2012
title Satellite Tobacco Necrosis Virus (Stnv) Virus Like Particle With The B3 Aptamer
authors R.J.Ford, A.M.Barker, S.E.Bakker, R.H.Coutts, N.A.Ranson, S.E.V.P A.R.Pearson, P.G.Stockley
compound source
Molecule: Coat Protein
Chain: A
Engineered: Yes
 Organism_scientific: Tobacco Necrosis Satellite Virus
Organism_common: Stnv
Organism_taxid: 12881
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.155 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
315.020 300.550 183.510 90.00 94.37 90.00
method X-Ray Diffractionresolution 2.29 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSequence-Specific, RNA-Protein Interactions Overcome Electrostatic Barriers Preventing Assembly of Satellite Tobacco Necrosis Virus Coat Protein., Ford RJ, Barker AM, Bakker SE, Coutts RH, Ranson NA, Phillips SE, Pearson AR, Stockley PG, J Mol Biol. 2013 Jan 11. pii: S0022-2836(13)00007-7. doi:, 10.1016/j.jmb.2013.01.004. PMID:23318955
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (4bcu.pdb1.gz) 1976 Kb
  • LPC: Ligand-Protein Contacts for 4BCU
  • CSU: Contacts of Structural Units for 4BCU
  • Structure Factors (12165 Kb)
  • Retrieve 4BCU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BCU from S2C, [Save to disk]
  • Re-refined 4bcu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BCU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BCU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BCU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bcu] [4bcu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4BCU
  • Community annotation for 4BCU at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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