4BEZ	Membrane Protein	date	Mar 12, 2013
title	Night Blindness Causing G90d Rhodopsin In The Active Conform
authors	A.Singhal, M.K.Ostermaier, S.A.Vishnivetskiy, V.Panneels, K.T.Ho J.J.G.Tesmer, D.Veprintsev, X.Deupi, V.V.Gurevich, G.F.X.Schert J.Standfuss
compound		source
Molecule: Rhodopsin Chain: A Synonym: Night Blindness Causing G90d Rhodopsin Engineered: Yes Mutation: Yes		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Organ: Eye Tissue: Retina Cell: Rod Photoreceptor Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gnti-
symmetry	Space Group: H 3 2	R_factor 0.229 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 242.440 242.440 110.360 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand	ACE, ACT, BMA, BOG, MAN, NAG, PLM, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Insights into congenital stationary night blindness based on the structure of G90D rhodopsin., Singhal A, Ostermaier MK, Vishnivetskiy SA, Panneels V, Homan KT, Tesmer JJ, Veprintsev D, Deupi X, Gurevich VV, Schertler GF, Standfuss J, EMBO Rep. 2013 Apr 12. doi: 10.1038/embor.2013.44. PMID:23579341

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (4bez.pdb1.gz) 108 Kb LPC: Ligand-Protein Contacts for 4BEZ CSU: Contacts of Structural Units for 4BEZ Structure Factors (328 Kb) Retrieve 4BEZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BEZ from S2C, [Save to disk] Re-refined 4bez structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BEZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BEZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BEZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bez_A] [4bez] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4BEZ

Community annotation for 4BEZ at PDBWiki (http://pdbwiki.org)

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