4BGZ	Viral Protein	date	Mar 29, 2013
title	Crystal Structure Of H5 (Tyty) Influenza Virus Haemagglutini
authors	X.Xiong, P.Coombs, S.R.Martin, J.Liu, H.Xiao, J.W.Mccauley, K.Loch P.A.Walker, P.J.Collins, Y.Kawaoka, J.J.Skehel, S.J.Gamblin
compound		source
Molecule: Hemagglutinin Chain: A, C, E Fragment: Ha1 Trypsin Released Ectodomain, Residues 17-338 Synonym: Haemagglutinin Ha1 Engineered: Yes		Organism_scientific: Influenza Virus Organism_taxid: 375457 Strain: Aturkeyturkey12005(H5n1) Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacgp67a
Molecule: Haemagglutinin Ha1 Chain: B, D, F Fragment: Ha2 Trypsin Released Ectodomain, Residues 347-512 Engineered: Yes		Organism_scientific: Influenza Virus Organism_taxid: 375457 Strain: Aturkeyturkey12005 (H5n1) Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacgp67a
symmetry	Space Group: P 1 21 1	R_factor 0.214 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.482 228.492 71.324 90.00 113.88 90.00
method	X-Ray Diffraction	resolution	2.68 Å
ligand	NAG, PO4	enzyme
Gene Ontology	Chain Function Process Component A, C, E F, D, B
Primary reference	Receptor binding by a ferret-transmissible H5 avian influenza virus., Xiong X, Coombs PJ, Martin SR, Liu J, Xiao H, McCauley JW, Locher K, Walker PA, Collins PJ, Kawaoka Y, Skehel JJ, Gamblin SJ, Nature. 2013 Apr 24. doi: 10.1038/nature12144. PMID:23615615

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (481 Kb) [Save to disk] Biological Unit Coordinates (4bgz.pdb1.gz) 472 Kb LPC: Ligand-Protein Contacts for 4BGZ CSU: Contacts of Structural Units for 4BGZ Structure Factors (2067 Kb) Retrieve 4BGZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BGZ from S2C, [Save to disk] Re-refined 4bgz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BGZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BGZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BGZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bgz_E] [4bgz_B] [4bgz_F] [4bgz_A] [4bgz_C] [4bgz] [4bgz_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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