4BI2 Scaffold Focused Virtual Screening: Prospective Application to the Discovery of TTK Inhibitor date
authors Langdon, S.R., Westwood, I.M., Montfort, R.L.M.van., Brown, N., Blagg, J.
compound source
symmetry
R_factor
R_Free 0.2260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.11
ligand 7PE, EDO, ZO8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceScaffold-Focused Virtual Screening: Prospective Application to the Discovery of TTK Inhibitors., Langdon SR, Westwood IM, van Montfort RL, Brown N, Blagg J, J Chem Inf Model. 2013 May 24;53(5):1100-12. doi: 10.1021/ci400100c. Epub 2013, May 14. PMID:23672464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (4bi2.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4BI2
  • CSU: Contacts of Structural Units for 4BI2
  • Structure Factors (315 Kb)
  • Retrieve 4BI2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BI2 from S2C, [Save to disk]
  • Re-refined 4bi2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BI2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BI2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BI2, from MSDmotif at EBI
  • Fold representative 4bi2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bi2] [4bi2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BI2: [S_TKc ] by SMART
  • Other resources with information on 4BI2
  • Community annotation for 4BI2 at PDBWiki (http://pdbwiki.org)

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