4BKT	Protein Transport	date	Apr 29, 2013
title	Von Hippel Lindau Protein:Elonginb:Elonginc Complex, In Comp (2s,4r)-N-Methyl-1-[2-(3-Methyl-1,2-Oxazol-5-Yl)Ethanoyl]-4 Pyrrolidine-2-Carboxamide
authors	I.Van Molle, D.M.Dias, M.Baud, C.Galdeano, C.F.G.C.Geraldes, A.Ci
compound		source
Molecule: Transcription Elongation Factor B Polypeptide 2 Chain: A, D, G, J Fragment: Residues 1-104 Synonym: Elongin 18 Kda Subunit, Elongin-B, Elob, Rna Polym Transcription Factor Siii Subunit B, Siii P18; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pcdf_duet1
Molecule: Transcription Elongation Factor B Polypeptide 1 Chain: B, E, H, K Synonym: Elongin 15 Kda Subunit, Elongin-C, Eloc, Rna Polym Transcription Factor Siii Subunit C, Siii P15, Elonginc; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pcdf-Duet1
Molecule: Von Hippel-Lindau Disease Tumor Suppressor Chain: C, F, I, L Fragment: Residues 54-213 Synonym: Protein G7, Pvhl Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Phat4
symmetry	Space Group: P 41 2 2	R_factor 0.190 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.180 93.180 364.500 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	ARG, CAS, GLU, QD0	enzyme
Gene Ontology	Chain Function Process Component A, J, D, G H, K, E, B
Primary reference	Is NMR Fragment Screening Fine-Tuned to Assess Druggability of Protein-Protein Interactions?, Dias DM, Van Molle I, Baud MG, Galdeano C, Geraldes CF, Ciulli A, ACS Med Chem Lett. 2014 Jan 9;5(1):23-28. Epub 2013 Nov 3. PMID:24436777

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (460 Kb) [Save to disk] Biological Unit Coordinates (4bkt.pdb1.gz) 114 Kb Biological Unit Coordinates (4bkt.pdb2.gz) 117 Kb Biological Unit Coordinates (4bkt.pdb3.gz) 117 Kb Biological Unit Coordinates (4bkt.pdb4.gz) 115 Kb LPC: Ligand-Protein Contacts for 4BKT CSU: Contacts of Structural Units for 4BKT Structure Factors (1293 Kb) Retrieve 4BKT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BKT from S2C, [Save to disk] Re-refined 4bkt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BKT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BKT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BKT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bkt_D] [4bkt_I] [4bkt_H] [4bkt_C] [4bkt_F] [4bkt_L] [4bkt_J] [4bkt_K] [4bkt_B] [4bkt] [4bkt_G] [4bkt_E] [4bkt_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4BKT: [Skp1] [UBQ ] by SMART

Other resources with information on 4BKT

Community annotation for 4BKT at PDBWiki (http://pdbwiki.org)

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