4BLB Signaling Protein date May 02, 2013
title Crystal Structure Of A Human Suppressor Of Fused (Sufu)-Gli1
authors A.L.Cherry, C.Finta, M.Karlstrom, D.De Sanctis, R.Toftgard, L.Jov
compound source
Molecule: Maltose-Binding Periplasmic Protein, Suppressor O Homolog;
Chain: A, B, C, D
Fragment: Mbpp Residues 29-392,Sufuh Residues 32-278,361-48
Synonym: Sufuh, Linker, Suppresor Of Fused
Engineered: Yes
Mutation: Yes
Other_details: Deletion Of Residues 279-360 And Replacement Psrgedp Linker. Deletion Of Residues 454-456. W61d, L62s, G P453a, K457a;
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_taxid: 469008, 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pljmbp4c

Molecule: Zinc Finger Protein Gli1
Chain: E, F, G, H
Fragment: Residues 332-338
Synonym: Transcriptional Activator Gl1, Glioma-Associated O Oncogene Gli;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.300 137.600 116.540 90.00 105.49 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand GLC, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • carbohydrate transmembrane t...


  • Primary referenceStructural basis of SUFU-GLI interaction in human Hedgehog signalling regulation., Cherry AL, Finta C, Karlstrom M, Jin Q, Schwend T, Astorga-Wells J, Zubarev RA, Del Campo M, Criswell AR, de Sanctis D, Jovine L, Toftgard R, Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2563-79. doi:, 10.1107/S0907444913028473. Epub 2013 Nov 19. PMID:24311597
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (985 Kb) [Save to disk]
  • Biological Unit Coordinates (4blb.pdb1.gz) 253 Kb
  • Biological Unit Coordinates (4blb.pdb2.gz) 251 Kb
  • Biological Unit Coordinates (4blb.pdb3.gz) 249 Kb
  • Biological Unit Coordinates (4blb.pdb4.gz) 248 Kb
  • LPC: Ligand-Protein Contacts for 4BLB
  • CSU: Contacts of Structural Units for 4BLB
  • Structure Factors (1329 Kb)
  • Retrieve 4BLB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BLB from S2C, [Save to disk]
  • Re-refined 4blb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BLB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BLB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BLB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4blb_A] [4blb_E] [4blb_F] [4blb_B] [4blb_D] [4blb_H] [4blb_G] [4blb_C] [4blb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BLB
  • Community annotation for 4BLB at PDBWiki (http://pdbwiki.org)

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