4BLT Hydrolase date May 04, 2013
title P4 Protein From Bacteriophage Phi12 S292a Mutant In Complex Ampcpp
authors K.El Omari, C.Meier, D.Kainov, G.Sutton, J.M.Grimes, M.M.Poranen, D.H.Bamford, R.Tuma, D.I.Stuart, E.J.Mancini
compound source
Molecule: Ntpase P4
Chain: A, B, C
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Phage Phi12
Organism_common: Bacteriophage Phi12
Organism_taxid: 161736
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.263 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.352 131.727 159.285 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand APC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceTracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution., El Omari K, Meier C, Kainov D, Sutton G, Grimes JM, Poranen MM, Bamford DH, Tuma R, Stuart DI, Mancini EJ, Nucleic Acids Res. 2013 Aug 11. PMID:23939620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (4blt.pdb1.gz) 561 Kb
  • LPC: Ligand-Protein Contacts for 4BLT
  • CSU: Contacts of Structural Units for 4BLT
  • Structure Factors (499 Kb)
  • Retrieve 4BLT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BLT from S2C, [Save to disk]
  • Re-refined 4blt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BLT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BLT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BLT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4blt] [4blt_C] [4blt_A] [4blt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BLT
  • Community annotation for 4BLT at PDBWiki (http://pdbwiki.org)

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