4BM8 Sugar Binding Protein date May 07, 2013
title Galectin-3c In Complex With Bisamido-Thiogalactoside Derivat
authors A.L.Noresson, C.T.Oberg, O.Engstrom, M.Hakansson, D.T.Logan, H.Le U.J.Nilsson
compound source
Molecule: Galectin-3
Chain: A
Fragment: Carbohydrate Recognition Domain, Residues 114-250
Synonym: Gal-3,35 Kda Lectin, Carbohydrate-Binding Protein 35, Galactose-Specific Lectin 3, Galactoside-Binding Protei Ige-Binding Protein, L-31, Laminin-Binding Protein, Lectin Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.840 58.240 62.750 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.96 Å
ligand A6J enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (4bm8.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 4BM8
  • CSU: Contacts of Structural Units for 4BM8
  • Structure Factors (1202 Kb)
  • Retrieve 4BM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BM8 from S2C, [Save to disk]
  • Re-refined 4bm8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BM8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BM8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bm8] [4bm8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4BM8: [GLECT] [Gal-bind_lectin ] by SMART
  • Other resources with information on 4BM8
  • Community annotation for 4BM8 at PDBWiki (http://pdbwiki.org)

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