4BNC Dna-Binding Protein date May 14, 2013
title Crystal Structure Of The Dna-Binding Domain Of Human Etv1 Complexed With Dna
authors C.K.Allerston, C.D.O.Cooper, T.Krojer, A.Chaikuad, M.Vollmar, D.S C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, O.Gileadi
compound source
Molecule: Human Etv1
Chain: A
Fragment: Dna-Binding Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: 5'-D(Apcpcpgpgpapapgptpgp)-3'
Chain: B
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 5'-D(Cpapcptptpcpcpgpgptp)-3'
Chain: C
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 2 2
R_factor 0.2062 R_Free 0.2227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.883 64.883 129.587 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
note 4BNC supersedes 4B06
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of the Ets Domains of Transcription Factors ETV1, ETV4, ETV5 and FEV: Determinants of DNA Binding and Redox Regulation by Disulfide bond formation., Cooper CD, Newman JA, Aitkenhead H, Allerston CK, Gileadi O, J Biol Chem. 2015 Apr 12. pii: jbc.M115.646737. PMID:25866208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4bnc.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 4BNC
  • Structure Factors (112 Kb)
  • Retrieve 4BNC in mmCIF format [Save to disk]
  • Re-refined 4bnc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BNC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BNC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BNC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bnc_C] [4bnc] [4bnc_B] [4bnc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BNC: [ETS ] by SMART
    • Other resources with information on 4BNC
  • Community annotation for 4BNC at PDBWiki (http://pdbwiki.org)

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