OCA Atlas for 4BP9

4BP9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

FC0, OAR

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, C, F, D, E, A

Primary reference

Crystal structures of Trypanosoma brucei oligopeptidase B broaden the paradigm of catalytic regulation in prolyl oligopeptidase family enzymes., Canning P, Rea D, Morty RE, Fulop V, PLoS One. 2013 Nov 12;8(11):e79349. doi: 10.1371/journal.pone.0079349., eCollection 2013. PMID:24265767

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1405 Kb) [Save to disk]

Biological Unit Coordinates (4bp9.pdb1.gz) 238 Kb

Biological Unit Coordinates (4bp9.pdb2.gz) 239 Kb

Biological Unit Coordinates (4bp9.pdb3.gz) 240 Kb

Biological Unit Coordinates (4bp9.pdb4.gz) 238 Kb

Biological Unit Coordinates (4bp9.pdb5.gz) 244 Kb

Biological Unit Coordinates (4bp9.pdb6.gz) 243 Kb

LPC: Ligand-Protein Contacts for 4BP9

CSU: Contacts of Structural Units for 4BP9

Structure Factors (1047 Kb)

Retrieve 4BP9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4BP9 from S2C, [Save to disk]

Re-refined 4bp9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BP9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bp9] [4bp9_A] [4bp9_B] [4bp9_C] [4bp9_D] [4bp9_E] [4bp9_F] [4bp9_G] [4bp9_H] [4bp9_I] [4bp9_J] [4bp9_K] [4bp9_L]

SWISS-PROT database:

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